Mathematical Methods for Exploring and Analyzing Morphological Shapes across Biological Scales
Videos from BIRS Workshop
Felix Zhou, UT Southwestern Medical Center
Monday Sep 4, 2023 09:21 - 10:00
Surface-guided computing to study 3D subcellular morphology and signal dynamics across space and time
Haig Alexander Eskandarian, University of California San Francisco
Monday Sep 4, 2023 10:31 - 11:05
Revealing fundamental cell processes in mycobacteria using Long-Term Time-Lapse Atomic Force Microscopy (LTTL-AFM)
Anotida Madzwamuse, University of British Columbia
Monday Sep 4, 2023 11:03 - 11:35
From single to collective cell migration using geometric bulk-surface PDEs
Emmet Francis, UCSD
Monday Sep 4, 2023 14:30 - 15:00
Simulating cell signaling networks in realistic geometries, from dendritic spines to whole neurons
Joe Kileel, UT Austin
Tuesday Sep 5, 2023 09:04 - 09:31
Diffusion Maps for Shape Space Analysis
Bongjin Koo, UCSB
Tuesday Sep 5, 2023 09:32 - 10:00
CryoChains: Heterogeneous Reconstruction of Molecular Assembly of Semi-flexible Chains from Cryo-EM Images
Laurent Younes, John Hopkins University
Tuesday Sep 5, 2023 10:30 - 11:03
Incorporating growth models in Riemannian shape spaces
Martin Bauer, Florida State University
Tuesday Sep 5, 2023 11:03 - 11:31
Elastic shape analysis on the space of curves and shape graphs
Nicolas Charon, University of Houston
Tuesday Sep 5, 2023 13:00 - 13:30
A numerical framework for elastic shape analysis of surfaces with some recent applications to human body pose
Matheus Viana, Allen Institute for Cell Science
Tuesday Sep 5, 2023 13:32 - 14:00
Quantifying biological variability using appropriate data representations of microscopy image data
Marcos Nahmad, Center for Research and Advanced Studies
Tuesday Sep 5, 2023 14:03 - 14:43
Dynamics of fold formation during patterning and growth of the Drosophila wing disc
Jianhua Xing, University of Pittsburg
Tuesday Sep 5, 2023 15:01 - 15:29
Trace cell state transition in collective cell feature space using live cell imaging
Jay Newby, University of Alberta
Tuesday Sep 5, 2023 15:29 - 16:06
Annular organization of multiphase liquid droplets in the nucleus
Sonya Hanson, Flatiron Institute
Wednesday Sep 6, 2023 09:04 - 09:30
Outstanding Challenges for Conformational Heterogeneity Analysis in Single-Particle Cryo-EM
Yuhang Wang, DP Technology
Wednesday Sep 6, 2023 09:37 - 09:50
Shape Recognition and Model Building in Cryo-EM with FFF
Elaheh Alizadeh, Jackson Lab
Wednesday Sep 6, 2023 10:35 - 11:05
Using cell morphology to predict senescence in H$\&$E images
Elaheh Alizadeh, Jackson Lab
Wednesday Sep 6, 2023 10:35 - 11:05
Using cell morphology to predict senescence in H$\&$E images
Amit Singer, Princeton University
Wednesday Sep 6, 2023 11:07 - 11:37
Non-Euclidean Metrics for Cryo-EM Analysis
Emily King, Colorado State University
Thursday Sep 7, 2023 09:03 - 09:30
A potpourri of multi-scale mathematical techniques
Gary Choi, The Chinese University of Hong Kong
Thursday Sep 7, 2023 09:39 - 09:50
Quantifying shape variation using quasi-conformal geometry
Robert Ravier, Duke University
Thursday Sep 7, 2023 10:31 - 11:00
Hypothesis Testing on Patch Spaces via Manifold Moving Least Squares with Application to Evolutionary Anthropology
Shira Faigenbaum-Golovin, Duke University
Thursday Sep 7, 2023 11:03 - 11:20
Fine registration of a collection of surfaces by studying the geometry of the base manifold
Kingshuk Ghosh, Univ of Denver
Thursday Sep 7, 2023 13:04 - 13:30
Modeling Conformations of the Intrinsically Disordered Proteins: Integrating Theoretical Physics and Data Science
Assaf Amitai, Genentech
Thursday Sep 7, 2023 13:35 - 14:00
Investigating a Universal Flu Vaccine's Development and SARS-CoV-2 Evolution via Viral Spike Geometry
Aryan Tajmir Riahi, University of British Columbia
Thursday Sep 7, 2023 14:26 - 14:40
Applications of Optimal Transport in Alignment of Cryogenic Electron Microscopy Density Maps
Lilianna Houston, Denver University
Thursday Sep 7, 2023 15:04 - 15:15
Building a classification tool for cell morphology simulations
Wanxin Li, University of British Columbia
Thursday Sep 7, 2023 15:22 - 15:30
Using a Riemannian Elastic Metric for Statistical Analysis of Tumor Cell Shape Heterogeneity
Clément Soubrier, University of British Columbia
Thursday Sep 7, 2023 15:30 - 15:45
End to end pipeline for cell shape dynamics analysis from atomic force microscopy time series
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Thursday Sep 7, 2023 15:42 - 16:00
CellOrganizer: Learning Morphological, Spatial, and Dynamic Models for Cellular and Subcellular Components
Chenwei Zhang, University of British Columbia
Thursday Sep 7, 2023 16:01 - 16:15
ViDa: Visualization of DNA Reaction Trajectories Using Deep Graph Embeddings
Amil Khan, UCSB
Friday Sep 8, 2023 09:03 - 09:14
Cell Geometry: A Web-based Application for Cell Shape Analysis
Amil Khan, UCSB
Friday Sep 8, 2023 09:03 - 09:14
Cell Geometry: A Web-based Application for Cell Shape Analysis
