The Topology of Nucleic Acids: Research at the Interface of Low-Dimensional Topology, Polymer Physics and Molecular Biology

Videos from BIRS Workshop 19w5226

, Florida State University
- 09:28
Scientific Applications of Topology
Watch video | Download video: 201903250902-Sumners.mp4 (108M)
, University College London
- 09:54
Untangling twisted DNA, one molecule at a time
Watch video | Download video: 201903250931-Pyne.mp4 (78M)
, York University
- 10:56
Thoughts on lattice knot statistics
Watch video | Download video: 201903251031-JansevanRensburg.mp4 (91M)
, Colorado State University
- 14:28
New questions for knot diagrams
Watch video | Download video: 201903251402-Chapman.mp4 (119M)
, Rutgers University
- 15:02
Contributions of nucleotide sequence and Lac repressor geometry to DNA looping events
Watch video | Download video: 201903251433-Olson.mp4 (96M)
, University of Texas at Austin
- 09:29
A Dynamic E. coli Genome: Widespread DNA Contacts Revealed by Monitoring Mu Transposition.
Watch video | Download video: 201903260901-Harshey.mp4 (95M)
, Swinburne University of Technology
- 10:06
Recent advances in the Monte Carlo sampling of polymer configurations
Watch video | Download video: 201903260937-Clisby.mp4 (105M)
, Universita' di Napoli
- 11:04
Models of Polymer Physics for the 3D Structure of Chromosomes
Watch video | Download video: 201903261033-Nicodemi.mp4 (116M)
, Western Kentucky University
- 11:35
Geometric measures of knots in extreme confinement
Watch video | Download video: 201903261109-Ziegler.mp4 (95M)
, University of Melbourne
- 12:08
Knotting statistics for polygons in lattice tubes
Watch video | Download video: 201903261138-Beaton.mp4 (96M)
, North Carolina State University
- 14:00
TDA and machine learning approaches to the colored Jones polynomial
Watch video | Download video: 201903261335-Sazdanovic.mp4 (82M)
, University of North Carolina
- 14:36
Braid Index Bounds Ropelength From Below
Watch video | Download video: 201903261406-Diao.mp4 (106M)
, Saitama University
- 20:31
3-dimensional topology and polycontinuous pattern
Watch video | Download video: 201903262008-Shimokawa.mp4 (79M)
, University of Texas at Austin
- 09:30
Role of DNA Topology in Biological Machines and Evolutionarily Related Biological Functions: Chemical Chirality in Site-Specific DNA Recombination
Watch video | Download video: 201903270901-Jayaram.mp4 (107M)
, University of California Davis
- 10:03
Site-specific recombination and the band surgery along knots
Watch video | Download video: 201903270935-Moore.mp4 (113M)
, Yamaguchi University
- 11:03
First steps of unlinking pathways
Watch video | Download video: 201903271033-Ishihara.mp4 (101M)
, Universidad Autónoma de San Luis Potosí Inicio
- 11:25
When can a link be obtained from another using crossing exchanges and smoothings?
Watch video | Download video: 201903271108-MedinaGraciano.mp4 (70M)
, University of California Davis
- 12:02
Topological modeling of reconnections
Watch video | Download video: 201903271130-Vazquez.mp4 (135M)
, University of Texas at Dallas
- 09:36
Kinetic Pathways of Topology Simplification by Type-II Topoisomerases in Knotted Supercoiled DNA
Watch video | Download video: 201903280901-Levene.mp4 (97M)
, University of York
- 10:01
Modelling DNA under protein-binding, stretching and torsional stress
Watch video | Download video: 201903280939-Noy.mp4 (60M)
, Ochanomizu University
- 11:00
Rouse Dynamics of Topological Polymers through Gaussian Random Embeddings and Comparison with Experiments
Watch video | Download video: 201903281032-Deguchi.mp4 (75M)
, University of California Santa Barbara
- 11:23
A study of the effects of entanglement and chain architecture in polymers
Watch video | Download video: 201903281105-Panagiotou.mp4 (67M)
, University of South Florida
- 11:59
Algebraic structures related to DNA origami
Watch video | Download video: 201903281130-Jonoska.mp4 (87M)
, University of California Santa Barbara
- 14:02
Gordian Knotted Structures
Watch video | Download video: 201903281331-Millett.mp4 (103M)
, Pomona College
- 14:40
Possible pathways for protein knot folding
Watch video | Download video: 201903281412-Flapan.mp4 (84M)
, Western Kentucky University
- 15:02
Computing the braid index using only a knot diagram and knots where the braid index equals the bridge index
Watch video | Download video: 201903281440-Ernst.mp4 (73M)
, University of California, Davis
- 09:31
A liquid crystal model for DNA packing in bacteriophages
Watch video | Download video: 201903290900-Arsuaga.mp4 (83M)
, University of British Columbia
- 10:05
Collapsing Hopf links and Wang-Landau simulations
Watch video | Download video: 201903290934-Rechnitzer.mp4 (98M)
, University of Leeds
- 10:38
TORC : A computational language for designing supercoiling-driven gene control in synthetic DNA circuits
Watch video | Download video: 201903291008-Harris.mp4 (100M)