Schedule for: 17w5134 - Challenges and Synergies in the Analysis of Large-Scale Population-Based Biomedical Data
Beginning on Sunday, November 26 and ending Friday December 1, 2017
All times in Oaxaca, Mexico time, CST (UTC-6).
| Sunday, November 26 |
| 14:00 - 23:59 |
Check-in begins (Front desk at your assigned hotel) |
| 19:30 - 22:00 |
Dinner (Restaurant Hotel Hacienda Los Laureles) |
| 20:30 - 21:30 |
Informal gathering (Hotel Hacienda Los Laureles) |
| Monday, November 27 |
| 07:30 - 08:45 |
Breakfast (Restaurant at your assigned hotel) |
| 08:45 - 09:00 |
Introduction and Welcome (Conference Room San Felipe) |
| 09:00 - 09:30 |
Elham Azizi: Bayesian Inference of Cell Type-Specific Gene Regulatory Networks (Conference Room San Felipe) |
| 09:30 - 10:00 |
Smita Krishnaswamy: Manifold-Learning Frameworks for Extracting Structure from High-throughput Single-Cell Datasets (Conference Room San Felipe) |
| 10:00 - 10:30 |
Itsik Pe'er: Latent-space temporal models for microbiome population dynamics (Conference Room San Felipe) |
| 10:30 - 11:00 |
Coffee Break (Conference Room San Felipe) |
| 11:00 - 11:30 |
Cei Abreu-Goodger: An extracellular RNA interference pathway as a mechanism of parasite-host communication. (Conference Room San Felipe) |
| 11:30 - 12:00 |
Hamed Najafabadi: Inference of mRNA stability from RNA-sequencing (Conference Room San Felipe) |
| 12:00 - 12:20 |
Ritambhara Singh: Attend and Predict: Understanding Gene Regulation by Selective Attention on Chromatin (Conference Room San Felipe) |
| 12:20 - 12:40 |
Group Photo (Hotel Hacienda Los Laureles) |
| 12:40 - 14:50 |
Lunch (Restaurant Hotel Hacienda Los Laureles) |
| 14:50 - 15:20 |
Selene Lizbeth Fernandez-Valverde: Early evolution of gene regulation in the animal kingdom (Conference Room San Felipe) |
| 15:20 - 15:40 |
Sam Lambert: Extensive divergence of eukaryotic transcription factor sequence specificity (Conference Room San Felipe) |
| 15:40 - 16:00 |
Laura Campitelli: Reconstructing the evolutionary history of endogenous retroelements (Conference Room San Felipe) |
| 16:00 - 16:30 |
Coffee Break (Conference Room San Felipe) |
| 16:30 - 17:00 |
Debora Marks: Learning the Secrets of Sequences with Variational Autoencoders (Conference Room San Felipe) |
| 17:00 - 17:20 |
Perry Palmedo: Enhancing Evolutionary Couplings with Deep Convolutional Neural Networks (Conference Room San Felipe) |
| 17:20 - 17:50 |
Max Leiserson: A Multi-Species Functional Embedding Integrating Sequence and Network Structure (Conference Room San Felipe) |
| 18:10 - 19:00 |
Free time (Conference Room San Felipe) |
| 19:00 - 21:00 |
Dinner (Restaurant Hotel Hacienda Los Laureles) |
| Tuesday, November 28 |
| 07:30 - 09:00 |
Breakfast (Restaurant at your assigned hotel) |
| 09:00 - 09:30 |
Peter Van Loo: Molecular archaeology of cancer (Conference Room San Felipe) |
| 09:30 - 10:00 |
David Wedge: Cancer evolution: Order matters (Conference Room San Felipe) |
| 10:00 - 10:30 |
Wenyi Wang: Robust subclonal architecture reconstruction from ~2,700 cancer genomes (Conference Room San Felipe) |
| 10:30 - 11:00 |
Coffee Break (Conference Room San Felipe) |
| 11:30 - 12:00 |
Jonas Demeulemeester: Catastropic events in tumour evolution: chromothripsis, chromoplexy and kataegis (Conference Room San Felipe) |
| 12:00 - 12:20 |
Jeff Wintersinger: Why don't tumour copy number reconstruction methods agree? (Conference Room San Felipe) |
| 12:20 - 12:40 |
Tyler Funnell: Integrative analysis of point mutation and structural variation signatures in human cancer genomes (Conference Room San Felipe) |
| 12:40 - 15:00 |
Lunch (Restaurant Hotel Hacienda Los Laureles) |
| 15:00 - 15:30 |
Shamil Sunyaev: Mutation and selection in cancer (Conference Room San Felipe) |
| 15:30 - 16:00 |
Quaid Morris: Reconstructing cancer phylogenies from pairwise relationships among mutations. (Conference Room San Felipe) |
| 16:00 - 16:30 |
Coffee Break (Conference Room San Felipe) |
| 16:30 - 17:00 |
David Gresham: Real time tracking of CNVs in evolving populations (Conference Room San Felipe) |
| 17:00 - 17:30 |
Michael Hallett: Detecting molecular interactions between tissues in breast cancer (Conference Room San Felipe) |
| 17:30 - 18:00 |
Luis Alberto Cantera: On the Global Dynamics of Mathematical Models and Orthogonal Fitting (Conference Room San Felipe) |
| 18:00 - 19:00 |
Free Time (Conference Room San Felipe) |
| 19:00 - 21:00 |
Dinner (Restaurant Hotel Hacienda Los Laureles) |
| Wednesday, November 29 |
| 07:30 - 09:00 |
Breakfast (Restaurant at your assigned hotel) |
| 09:00 - 09:30 |
Celia Greenwood: A general framework for variable selection in linear mixed models, with applications to genetic studies with structured populations (Conference Room San Felipe) |
| 09:30 - 10:00 |
David Balding: Genome-wide models for heritability and prediction (Conference Room San Felipe) |
| 10:00 - 10:30 |
Eran Halperin: Sparse PCA with applications in methylation analysis (Conference Room San Felipe) |
| 10:30 - 11:00 |
Coffee Break (Conference Room San Felipe) |
| 11:00 - 11:30 |
Noah Zaitlen: Phenotypic heterogeneity within and between populations (Conference Room San Felipe) |
| 11:30 - 12:00 |
Gil McVean: Mapping the genetic structure of pleiotropy from routine healthcare data (Conference Room San Felipe) |
| 12:00 - 12:30 |
Simon Gravel: Genomics like it’s 1960: revisiting classical models with modern data (Conference Room San Felipe) |
| 12:45 - 14:30 |
Lunch (Restaurant Hotel Hacienda Los Laureles) |
| 14:30 - 15:00 |
John Ingraham: Learning the sequence to structure map (Conference Room San Felipe) |
| 15:00 - 15:30 |
Adrian Cortes: Genetic association analysis across tree-structure routine healthcare data (Conference Room San Felipe) |
| 15:30 - 16:00 |
Barbara Engelhardt: Two sample Bayesian covariance test (Conference Room San Felipe) |
| 16:00 - 16:30 |
Coffee Break (Conference Room San Felipe) |
| 16:30 - 17:00 |
Adam Siepel: New methods for measuring natural selection and predicting deleterious variants in noncoding regions of the human genome (Conference Room San Felipe) |
| 17:00 - 17:30 |
Francesco Paolo Casale: Mixed model approaches to study complex gene-environment interactions (Conference Room San Felipe) |
| 17:30 - 18:00 |
Lourdes Peña Castillo: Sub-group discovery associated with commorbidities in Type 1 Diabetes. (Conference Room San Felipe) |
| 18:00 - 19:00 |
Free Time (Conference Room San Felipe) |
| 19:00 - 21:00 |
Dinner (Restaurant Hotel Hacienda Los Laureles) |
| Friday, December 1 |
| 07:30 - 09:00 |
Breakfast (Restaurant at your assigned hotel) |
| 09:00 - 10:30 |
Participant-driven, parallel group discussion. ↓ Please add topics to the chalk boards, and/or sign up under one or more topics. (Conference Room San Felipe) |
| 10:30 - 11:00 |
Coffee Break (Conference Room San Felipe) |
| 11:00 - 12:00 |
Participant-driven, parallel group discussion. ↓ Please add topics to the chalk boards, and/or sign up under one or more topics. (Conference Room San Felipe) |
| 12:00 - 14:00 |
Lunch (Restaurant Hotel Hacienda Los Laureles) |
